NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20151J14362_10071741

Scaffold JGI20151J14362_10071741


Overview

Basic Information
Taxon OID3300001346 Open in IMG/M
Scaffold IDJGI20151J14362_10071741 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1343
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002747Metagenome / Metatranscriptome533Y
F026288Metagenome / Metatranscriptome198Y
F058695Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
JGI20151J14362_100717411F058695N/APDYQANNEGKTYVNSAQCTLNELQNQVTELKQGLEQGKNFSLLGENV*
JGI20151J14362_100717412F002747GGAGMAKDQRYFVDVCLEIYVPDQGCGDKALTNESKDANWFANEICSQIPKAINKNFKYSERPYSVNDATFVKQQRG*
JGI20151J14362_100717416F026288AGGTGGMPTAKQSWLNKYQTYYAQTEYNKEHYGKRIKQLQAMLEDEKFLEFLSHKEHKDDILHYLAKSNEFDMYIVYTEQGDPYIADKDFGLI
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