NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20156J14371_10017517

Scaffold JGI20156J14371_10017517


Overview

Basic Information
Taxon OID3300001347 Open in IMG/M
Scaffold IDJGI20156J14371_10017517 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_06
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4037
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010615Metagenome / Metatranscriptome301Y
F060720Metagenome132N

Sequences

Protein IDFamilyRBSSequence
JGI20156J14371_100175177F060720AGGAMKDKKQSLSIEDRYWEIDFFTDKLRAAGKLMAEESITQDFCKDMQEEAIAALKAIYERAAAHRDYLKEIRDSVDAEEDRELTRIQEEAVKRLNKGIKELTSKLNK*
JGI20156J14371_100175179F010615N/AMQTIQLEGLELRPDKYFDVTVEAEAVTTQCESSSEVGESVVTEAWEERDLDEFEIVSLVYWPNDDTPVDLPTIVLTHDDRATIYEETLRYI*
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