NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20156J14371_10018772

Scaffold JGI20156J14371_10018772


Overview

Basic Information
Taxon OID3300001347 Open in IMG/M
Scaffold IDJGI20156J14371_10018772 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_06
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3837
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030436Metagenome185N
F038672Metagenome165N
F043411Metagenome / Metatranscriptome156N
F056150Metagenome138N

Sequences

Protein IDFamilyRBSSequence
JGI20156J14371_1001877213F043411GAGGMDWMTKKTFKKEMLKRRLTYNNKRVYIKSLDSKLAIVSHTEEGNYKQFKV
JGI20156J14371_100187722F038672N/AMDELDIMLRKNKLDIMIIKASAEVEKTNNKVKQEGLEVLMDILELIHDLQHEIRQNYKDISKLKYENAVAYKENAIIKADFSTYKHNLKKAELETNKNG*
JGI20156J14371_100187727F030436N/AMKSTLKKIAEIIKEYKQTDVFDGNSLNKQLKELTAYLYYIETIRTKAHNDFEKVIHNRVKEGFSVARATNEANVEVPEMYELRRLLESGYRVVDAMRTNISFLKSEMYNVTKEY*
JGI20156J14371_100187729F056150N/AMDKKLIKKIENFIFWIGREYKVVELEDFKQDIFIILLNKGEDFIIQLDKENSIKKYVYKLCLYQIISERGQYRTKYYLPSQFSSIEDIETYSNSCFKDEVLKDLINSLDGLDKIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKQKWTLNEFYS*
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