NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20160J14292_10054645

Scaffold JGI20160J14292_10054645


Overview

Basic Information
Taxon OID3300001349 Open in IMG/M
Scaffold IDJGI20160J14292_10054645 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1763
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059018Metagenome / Metatranscriptome134N
F070161Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
JGI20160J14292_100546452F070161GAGGMSFNASDLLKLVQDFGETLTLRKVTTGGTYDASTGTVSGSATTDYSFTGYFYNLAEGISDLSQTRRGRRACVIPAKGLSATPDDEDQILGNGDAVNITTVRTIFSGGQAVCYLCETFE*
JGI20160J14292_100546453F059018GAGMAVPKLKVSPALKAKLAEIDEMLEDAVERKMTDVARTIVLASPVDTGAFVNSWSFKDNLGGGRSKSSDNKPRGRDKGAERGKGLNSLVNDIKKTVEVGSPGGSVREGIALQAGNYYFINRAPHAIEVERKKQIVDKIIRQHGR*
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