NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20153J14318_10120357

Scaffold JGI20153J14318_10120357


Overview

Basic Information
Taxon OID3300001351 Open in IMG/M
Scaffold IDJGI20153J14318_10120357 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_03
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)683
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010919Metagenome / Metatranscriptome297Y
F011006Metagenome / Metatranscriptome296Y
F015148Metagenome / Metatranscriptome257Y

Sequences

Protein IDFamilyRBSSequence
JGI20153J14318_101203571F015148N/AMDWYSPPEYKEYECTECGADIEKPGVCSGTCHEASMI*
JGI20153J14318_101203572F011006AGAAGMKKIIDKFLIKRSIRPYKIVPLSTGVIVEHYRNGKLKTEYYGLV*
JGI20153J14318_101203574F010919N/ALYIALLLTNKTYMTETVNLPLEEFKKLYAIKIRLETYFKYMQDDRGVLKDIAPTFLDDAKEYIKEYNELTNEKAYV*
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