NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20157J14317_10005041

Scaffold JGI20157J14317_10005041


Overview

Basic Information
Taxon OID3300001352 Open in IMG/M
Scaffold IDJGI20157J14317_10005041 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9970
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (91.30%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-6(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006939Metagenome / Metatranscriptome361N
F033796Metagenome / Metatranscriptome176N
F036783Metagenome / Metatranscriptome169N
F053299Metagenome / Metatranscriptome141N
F059965Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
JGI20157J14317_1000504111F059965GGAMPLPRSMEMELMELGILKSDTEELESIAEQTGFYALRAETVAWHNTLIVEGEVMF*
JGI20157J14317_1000504112F006939AGAAGGMTLPTNMVTNVLSENQNKFITVKFLTKDNEERTYNGRMNVIKGLKGNERGQIAAEALRKAGYITLKTSKGYKCFNVDRVLGFVAGGRRIFGLGTEV*
JGI20157J14317_1000504113F033796GAGGMSSNDENKTYKVAGINKGKGKGVTVLDGRERVLEEAEQSAKLLTGKYALENSVGISNFVAFNTHALTMLPPYSIDMEAEWNYVVEQEGDTPSVEINKQAEGSI*
JGI20157J14317_1000504120F036783AGGAMEIVRQKYGSHVDTRVYVDLGYGEMEIDVEDIEMVDGELSAMAYCPQREIELYADHKDCERALAKFEKENSNE*
JGI20157J14317_100050418F053299GGAGMSDYKPYYRTDKMKQEELRAAKYVSILFFTMVAFSFIGFAFVLVKAMLYTTGLFL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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