NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20157J14317_10055359

Scaffold JGI20157J14317_10055359


Overview

Basic Information
Taxon OID3300001352 Open in IMG/M
Scaffold IDJGI20157J14317_10055359 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1783
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004166Metagenome / Metatranscriptome450N
F096597Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
JGI20157J14317_100553592F004166N/AMKKLILFFLFGLLISCSGDDTHDSWGSYATNKESKKQEFWFTSYKSRDECIADMQWQIEGGEDDSRQKISNWHTKPYGCHFMSNNKWLSIYNYLIYKDENLGCLWESSNPNVRIKYSVTLKTFVNVPEQGRCVLGD*
JGI20157J14317_100553595F096597AGGMKKLLLIALTIPNFVLADEFKLICEGEESKYRNDVLENTSKISLKLQVRDDSILIDSMTYKSKTFDYGAVKGSSKYVKEDAQIVLETTQVSNDCDTSLL
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