NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20158J14315_10226667

Scaffold JGI20158J14315_10226667


Overview

Basic Information
Taxon OID3300001355 Open in IMG/M
Scaffold IDJGI20158J14315_10226667 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)520
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium EB0_41B09(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015155Metagenome / Metatranscriptome257Y

Sequences

Protein IDFamilyRBSSequence
JGI20158J14315_102266671F015155N/ATFAVKSALTKVIFRIEIMTNALVKKITLFISTLFLSNLLCATSLQYFVDLPINQTLNAPYSYYTFRPSPMMDKAIESLPAYSNVKKCTTDNITDAIIILKPILSYQAQSTILYGDLHVKIYQTRSDNQTNPDNFIKKMKISLWKVVKFDKVTMGYYVNEMYTELLKNLTSEIN
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