Basic Information | |
---|---|
Taxon OID | 3300001356 Open in IMG/M |
Scaffold ID | JGI12269J14319_10144073 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1037 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Germany: Weissenstadt | |||||||
Coordinates | Lat. (o) | 50.13 | Long. (o) | 11.88 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000703 | Metagenome / Metatranscriptome | 928 | Y |
F099605 | Metagenome | 103 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI12269J14319_101440731 | F099605 | AGGAG | MPSTTNSASWDFNPSDPVHLSATFSFDTEDTQDSAPVAAAVAAIQARIAGASVTATQTDPATITVTITI* |
JGI12269J14319_101440732 | F000703 | N/A | MQVREYQESDLAELRAIHAAQGFAYPLPDLSNPLFVTKLILSEGSPLISADPIASEESDAQSAPTQQKILGAAFLRLTAEAYLLLDPRAGTPRQRWQWLLQLHAAAERDAWQRGLEDVHAWLPPPIAQKFGKRITHLGWRRDDTWTPYCKRLACPPGRPNP* |
⦗Top⦘ |