NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold YBBDRAFT_1118521

Scaffold YBBDRAFT_1118521


Overview

Basic Information
Taxon OID3300001372 Open in IMG/M
Scaffold IDYBBDRAFT_1118521 Open in IMG/M
Source Dataset NameYB-Back-sed
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of South Carolina
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)643
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. B506(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameYoungs Bay mouth
CoordinatesLat. (o)46.15968Long. (o)-123.80651Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018482Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
YBBDRAFT_11185211F018482N/AYGVGNSPARAQALEAGKIQASPFSFLERLELEKKGFPVLFDIGSVMPGFPFVVIVTSKQKIDSDPDGVVALLRGIKRGLEFLAGNHEKVAAAVIKKNHFGDPATVRKVIAQFAEVYSLAITKDDIDSLIAATRIEAEAKKLGGTDKFFTRQFVTKVLGSSR*
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