Scaffold JGI20181J14860_1001459

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI20181J14860_1001459

Scaffold JGI20181J14860_1001459

Overview

Basic Information
Taxon OID	3300001404 Open in IMG/M
Scaffold ID	JGI20181J14860_1001459 Open in IMG/M
Source Dataset Name	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-072012
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3283
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	Barrow Environmental Observatory site, Barrow, Alaska
Coordinates	Lat. (^o)	71.2999	Long. (^o)	-156.61	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F103617	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20181J14860_10014592	F103617	GAGG	LWRTIVNADYNHGEPTKFPKPGDPPLAESAVAQMDVHSAVLGEMLFCRGVNSFRTYLADLMTLIYEKYPKKLPSNKQTTYRFCIEHHIAGDLISALAEETVMGLVHQRLDALAKYFKKNLDLVLFTKGAHLANAGLCVDIPNVITHNRGIVNRFFIQRNPRFADDLGKRVVLSEQERREMLSTLGFCARHLDVRAIKKFGLETIEPEFKESANAPSPDGAA*

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