NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20181J14860_1017742

Scaffold JGI20181J14860_1017742


Overview

Basic Information
Taxon OID3300001404 Open in IMG/M
Scaffold IDJGI20181J14860_1017742 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-072012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)536
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008279Metagenome / Metatranscriptome336Y

Sequences

Protein IDFamilyRBSSequence
JGI20181J14860_10177422F008279N/AVKATAGTAPRPRSPEGRRIERAVTIATVLEFAAAIVLPVIVSSAGHSDWVLPSIAITIGPLLLWLDYRVXLPRYRPVGWALTLGPVILVVILSGTALVAITGLGAGILLLATAVAGFRDLAGVRQAAQRAKADGIVAPASVRAQT*
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