NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20173J14856_1031684

Scaffold JGI20173J14856_1031684


Overview

Basic Information
Taxon OID3300001412 Open in IMG/M
Scaffold IDJGI20173J14856_1031684 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)718
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065071Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
JGI20173J14856_10316841F065071N/APVEAISNEMAVEEEEERRAPAPAHHDGHKPAGVCTYSDCQEKRGWACAYKDLTGRECKSWWCRRHIQFXERTPFCPRHASVIRALAPTANTIFEIKNRPAVDDRALPLAALVAEDIDKDVTELVRRRYQNRKDVTLARDRTVRQTWSGRNDVAWERSWAALKSQGYLVRIAVRVSTEEPDTVQLLIGNTVVFKEVPDWISRRREGEPPDHADRARFGKKLFGAILEHVDEPQPVPSNV

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