Scaffold yes_10320243

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold yes_10320243

Scaffold yes_10320243

Overview

Basic Information
Taxon OID	3300001425 Open in IMG/M
Scaffold ID	yes_10320243 Open in IMG/M
Source Dataset Name	Goat rumen bacterial communities from Langston, Oklahoma, USA - velvet
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Cornell University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1822
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp. AM30-16	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Goat Rumen → Goat Rumen Microbial Communities From Langston University, Oklahoma, Usa

Source Dataset Sampling Location
Location Name	Langston, Oklahoma, USA
Coordinates	Lat. (^o)	35.453976	Long. (^o)	-97.515884	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F077963	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
yes_103202433	F077963	N/A	MKLLKRILDFFNVHPDKNQRWTLSTLFIVGLLYTYVQPAITKAWVTDLPAEWLAFQSLVYSVVGLFIGMIWKGVMRRWAIRWFTVLCIIESAAGFIVGMWLTFVNYNVWVLAIACLLYGTLVSEFISKCLMTFRPKLWNEKEREIYDNNNDVVCGIYCIVGYVCSLLFMPSLKVAMFVWGLTCAIDNIGWLVVYHKNRDKFCEIENEKSN

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