Scaffold JGI24032J14994_103239

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24032J14994_103239

Scaffold JGI24032J14994_103239

Overview

Basic Information
Taxon OID	3300001430 Open in IMG/M
Scaffold ID	JGI24032J14994_103239 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	553
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Kellogg Biological Station, Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019351	Metagenome / Metatranscriptome	230	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24032J14994_1032391	F019351	N/A	HLLIFLVLGLLALPIYFLDRALLGPTGGNWITLDFRGLIFWSYITLVVVHVASSSTAIFLFPNAGPLRIQLGSMVLSVVLLIAGVAVYGKVRRLVMSNEYQALMESRRRLINVIELKEWSYFPDESHPTEIRVNVIVHQSGRFAGNVTGKQTDSSGSSKTIFESINGPESQRQVGSGEVFTYA

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