Scaffold JGI24006J15134

Basic Information
Taxon OID	3300001450 Open in IMG/M
Scaffold ID	JGI24006J15134_10000289 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-53
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001450 Open in IMG/M

Scaffold ID

JGI24006J15134_10000289 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-53

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33536
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (54.90%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

33536

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (54.90%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.5666	Long. (^o)	-138.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

49.5666

Long. (^o)

-138.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053550	Metagenome / Metatranscriptome	141	Y
F056918	Metagenome	137	Y
F070556	Metagenome / Metatranscriptome	123	Y
F074050	Metagenome / Metatranscriptome	120	Y
F077815	Metagenome / Metatranscriptome	117	Y
F092746	Metagenome	107	Y
F092748	Metagenome	107	Y
F094425	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000028912	F056918	GAG	MKQLKVGDVVIAVFLGSPEPCEVIAITNKKEKLYKLRMNSGTILPGVTWLKNLDAKQKKTKPWHILKYVKHVKPKVQKDDKIKRSDLDQAIDEQRKFIRGEIKE*
JGI24006J15134_1000028919	F077815	AGGA	LKNRLKQIIREEVHSCLKEASYKFGTLADPKDMDPNDPMVKVTGFASLNRSSVRNQIVDRLSGALATAKDAAKGGESSYQAYKQLQDLISDAGILYKLIGAELDVANALEATRLKGGRRTIPIPKQ*
JGI24006J15134_1000028920	F074050	N/A	MKRSYITKLVKEEIHSLKNEASSKAIKRGTVTDNARLAMILTSLGKRAKGSFQKRKVVSQVIMQLATALEITPNEVLRAYIDYKRDAKGDASTKVKKDD*
JGI24006J15134_1000028928	F053550	AGTAGG	LKSIMILYFQLKDLGHFNMREEIKKARLKKKVMDNYPNATVEYTNTGVQIMSGDIYIAEEFYLPVTMDVETAWEYAAIACKTRQQFNRTHPMRMDLSDIESKINRINKRRGPRNKRK*
JGI24006J15134_1000028930	F092748	N/A	MKVTKPYSSLNQVAAINEKKVEHLGKNYATIDFEIKDQVNPTDFKYAKMKPVVGTFVIGNKRVEVTYSELNHILRTAAAAAEQCDMAYRIGKWGRAQKR*
JGI24006J15134_1000028931	F070556	N/A	MGFHKRYINDDQVIELYRTQGNQAVIDLYTKGVDAVITQGDLSEHVLDMLEIGLLTEVDKWNKISELISDASIEKGFE*
JGI24006J15134_1000028936	F092746	AGGAG	MSDIKNPQQVKRQLDEADNMLSILQNVIHRGLKIEPQEAQERFSKIRSKIKYAMDSISG*
JGI24006J15134_100002898	F094425	N/A	MKKKSEIKYGIEITKPHSKDMYSHNDMVAKEMKFNIRDAWANEVIKFNANDEWPTEGKIVDIQKGVCAVGYGEGYTIEEVQNDFLQELDNMANWQLHEEYSYMSFKNSLVPRTRFMMVGFDWEKHDYSFCTDIDISPIARMEEQVNNI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24006J15134_10000289

Overview

Ecosystem & Geography

Associated Families

Sequences