Scaffold JGI24006J15134

Basic Information
Taxon OID	3300001450 Open in IMG/M
Scaffold ID	JGI24006J15134_10001909 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-53
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001450 Open in IMG/M

Scaffold ID

JGI24006J15134_10001909 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-53

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11726
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (35.71%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

11726

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (35.71%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.5666	Long. (^o)	-138.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

49.5666

Long. (^o)

-138.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020371	Metagenome / Metatranscriptome	224	Y
F036977	Metagenome / Metatranscriptome	169	Y
F040142	Metagenome / Metatranscriptome	162	Y
F056157	Metagenome / Metatranscriptome	138	N
F106115	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000190910	F040142	N/A	MSLGTAGQEVNAKKFQVFIGTGDTNEWALIQNARVLVSHPIFREPTTNGGVVTYTGAPDNSISGTVLFTRDEWTTGTNGFGALLGGATGVEINEVPKKSWNVKFTDVSGSGTVVRLTFANCKLSSVDISKSVEGAVKADIQIVCPGEPTTATS*
JGI24006J15134_1000190911	F106115	N/A	MAVATAASIQAHLIGATYPEGTLSKNNIFDYEQYTTRRRYPSCEVITTQPESTVETKKSTDTTIAFEINYYDKNLGLRTDDVSTQREVENVIRARMETMVLQDYKIVLESKTWSRQSVQRDGSHPAYLVSTLKITVRQVNVTVMPVDGVLKFVKVGSTVDNAPGADYTYTNVFDVDLQSGYRDIEEGHTGSNIPKHFAGHIQGRFICNIMVKNADLGATGDKLNKMPLLTTNGERPEIKFVYTNKTADEQAITNTFTAEPESVQMLYKTNDAVVFRLIARLITDIIVT*
JGI24006J15134_1000190912	F056157	N/A	MVKKKLGQDDFWAQQIIRAQSGGKDYIFALVRRKYSEDDIEPTGPGQYIGLTEKKSYPKMTDNDPDSTTFGKRIDKPDAEPIGLKMKYEDEFTPENIKKYQSMFGINDFGETIFIYKFKQISIRADKVNEFWTTTQDDAYNKYILKEQVIKIEESKSNTRRRVSKKAG*
JGI24006J15134_1000190914	F020371	N/A	LGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGLTRLDEGQLGQLKELTYTRSNFEAEKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVGLADSSLTAKAAAGAWDTFTANTDHSDNSPLLDLGVAQLLIEGSGVGGKLSRIGMHPLDFAKYMSNTFIRGVASTKPSEVTFEPGTRELPGFPNAGLVLDNAIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLAAVIQAETGRQLTGCSTPTNWT*
JGI24006J15134_100019099	F036977	N/A	MSLDLTKQRLYSIETRVNKYIDQNIVQWATEEILLPGQTDIANSVSQRASEALSLEKTGFMKVDLVWDFRNEEGAPIHFFLEFGTRPHEIRAKGKDNGGADALHWTGPSGESRYAKVVQHPGTQARELISQIKEERIPDLRRRIVDETQNYMELEAI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24006J15134_10001909

Overview

Ecosystem & Geography

Associated Families

Sequences