Scaffold JGI24006J15134

Basic Information
Taxon OID	3300001450 Open in IMG/M
Scaffold ID	JGI24006J15134_10003981 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-53
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001450 Open in IMG/M

Scaffold ID

JGI24006J15134_10003981 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-53

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7888
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (72.22%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

7888

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (72.22%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.5666	Long. (^o)	-138.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

49.5666

Long. (^o)

-138.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F004990	Metagenome	416	Y
F008915	Metagenome / Metatranscriptome	326	Y
F015659	Metagenome	253	Y
F016879	Metagenome	244	Y
F017558	Metagenome / Metatranscriptome	240	Y
F020445	Metagenome / Metatranscriptome	224	N
F026438	Metagenome	198	N
F035490	Metagenome	172	N

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100039811	F035490	N/A	RDNMNKIKLGKRTWVNSKGKKQKAHTFTYKENNKKVVVQSPNKQWLEQEAEKILLRIGNINPKNMNVIISVPLSHAWETYSKKCKSRANEPTTNFSKTTFKEYSEHYKHIEKHCGDVDLTKVDVEYIADFIKKIDDLDFDYKKKIFHTFARIYDTQVGMAETDPFKVNVFKTATFFKKEDAPKKKKSGKIDFEEWNFDRIKTIISKIPSEPYQLMFKLMAETSCRPSEARAAQRKNFHFKRNIPVFEVTNSVDYEKQLAPPKTEAGYRELEISASLKDQLIDYMNTLPEEQQCIFLNSKGKFHDLKNMITCLDKAVESLNLKLPVDRKTYFFRHWNVSYWCYQGKYTNPFDLATHMGDLDLKFINTNYIKKYATSKDSVKYSDHQTSNYNWN*
JGI24006J15134_1000398110	F015659	GGA	MKERTLQDAIVQFRKNIDDSDYANLGAKGKYLTVPYRIKFVRDFFGERMSIQTNSTELANGSHKFRANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMTDFLKPQKKETLKPIVKLVPKDKPKLSIEQMANDWIEVLKKTAQHSVSVGKFEQNLNPLRKEYINELQTIYTDLIQQQRIDTAYISLQKQITNRKK*
JGI24006J15134_1000398112	F026438	N/A	MANHINVIGDSYTKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFIGGTLIHMIVQESLTKKLSLDDVIKSELIQTKIDEYEPNDEKDKKKFEFIVKTAKETAQNHLDNIDDLGQYEWSDEQERVLWTPPVNTYWLMYIDLIGKLAKAKDPEVLGDLKNKFGTVTLTKTKGWTYTNVKIPDRPFYSDVQQVSLYQKATGLKPFLSYASNCDRKLFTQENCEDLKQENLDKALKELMIYEIAWEKKLKLADGDLDTLAWLCCPDFSDIKKKSFWWTGVAQEQIDRLLKHYG*
JGI24006J15134_1000398115	F008915	GAG	MENNAITLDLYEMQSAAHLGILRCLESEKYQEKWGYNYKGSLNDQMAKSISGAMGEVALAKFLKIKFEYHCNVGGVPDLIFKDLRLQIRTQIPKNNNSLIIRPKAKPNEFYILVIDEAPNFKILGFVNSTYVLGQDKFKTDFGLARPPCYSIPPDKLTPINLLKDSSWN*
JGI24006J15134_1000398116	F004990	GGA	MYGDPKKPCCVCGKGADLREHTKYFCCDHYAINILGKTMEQIEKELGKNNEKIGSS*
JGI24006J15134_1000398118	F001839	AGGA	LKYFEKIDKDLLNNRALNSHEKLIYIICKSFENAPNKCRISHKYLMIRTGIKTKATLIRCLDRLTMFGMLARKQIDNGTCHYVFDKPTMQEYILHNTNKRRKISLSKNRHNRNLNAALSSPNVINMGKVIK*
JGI24006J15134_100039812	F017558	AGG	MFFIIFKNKNNMFTSYSNQIFSTEAEATDYAKRSFKRKDIWQVVRYDKENYDKYWYKT*
JGI24006J15134_100039816	F016879	AGTAG	MSVIKESFFEASFKTIEEFDNAEVAAASNVSNNAELKIMDIKLDKSLIKTNKEESNDGKEQQSIEKI*
JGI24006J15134_100039819	F020445	AGGA	MSEYDNSAALWKRQARDTDVAGKKYPHYNGNITVGGKKMNLAAWLNTEKTKEGQPDISLKISEIVAKEGQPF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24006J15134_10003981

Overview

Ecosystem & Geography

Associated Families

Sequences