NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24006J15134_10005073

Scaffold JGI24006J15134_10005073


Overview

Basic Information
Taxon OID3300001450 Open in IMG/M
Scaffold IDJGI24006J15134_10005073 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6898
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034754Metagenome174Y
F040924Metagenome161Y
F084450Metagenome112Y
F092880Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
JGI24006J15134_1000507311F034754GGAGGMRIGDLVDINQERGSGSYKHTIPRGLGVVVRLEETEPLMFGKIGPIDLGPLVHVLLNTGETEGFSPKSVEVIRESR*
JGI24006J15134_1000507314F092880AGGMKAGDLVKYNSRILLVLEPSPDDYGYAAGWWRCQEVGTNRIRIYSPTQLTVIKTEAQFYL
JGI24006J15134_100050734F084450AGGAGMTEEQTMIEAWVKKNKPKRYTHGERPEGMEVPTISSWGRGRRKKSKAESQAELDAEKG*
JGI24006J15134_100050735F040924GAGGMKTKMVYLTVAVEIDAEADEKEVIENCDYFFDSAAIKSTEIQEIFTEEQMKKDDSPDLYGLASSNFA*
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