NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24006J15134_10005858

Scaffold JGI24006J15134_10005858


Overview

Basic Information
Taxon OID3300001450 Open in IMG/M
Scaffold IDJGI24006J15134_10005858 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6350
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005620Metagenome395Y
F014071Metagenome / Metatranscriptome266Y
F028524Metagenome / Metatranscriptome191Y
F047373Metagenome150Y
F048646Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
JGI24006J15134_1000585810F047373GGAGGMITNQKIDVGDVTYSPLSHVLRFTVAANSDAIRTIEDIVGRNDMSMEEIAEEMGKILEQAIRMGYTRGGMRRRFD*
JGI24006J15134_1000585813F005620AGGAMTQEEMYTKQVETFKTFCKNNRLRLKEDGDGLPVARAIGKFKDDQFFCNFKDGTIGVYVTRESPRQFTYLNKKLMKMGCMPTQLGDFEAAYDLEWMNIPPVARLLKIKKGAAKVSDPKWLRQ*
JGI24006J15134_1000585815F014071AGGAGMATRPGRLIDKTFTSFTEASGRLEDTIGWVTKAKDFAHEFEPGCKAEVTLHLLEEVLEKAGRELDRASTELAMEVFGDK*
JGI24006J15134_1000585817F028524AGGMINTTNEFESTVKEFVNKLTTIENEMTILRQDRTELFTEMKSKLDPRSFRAAVKIHNLQKSTPDQTSLSRILDVLETAE*
JGI24006J15134_100058583F048646GGAGGVLKVSEVYEKQIKNTIERPDGSSYINFEKVYTDRECLISTKYIVSVRPYEFTATQDIQKLDGRFPEGAKFSTLVLDGNSFRTSEMIVVGSFESFCRRLQEKAS*
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Biomedical Sciences Research Center "Alexander Fleming"
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