NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24006J15134_10008229

Scaffold JGI24006J15134_10008229


Overview

Basic Information
Taxon OID3300001450 Open in IMG/M
Scaffold IDJGI24006J15134_10008229 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5247
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017045Metagenome / Metatranscriptome243Y
F017558Metagenome / Metatranscriptome240Y
F072753Metagenome121N
F077795Metagenome117N
F092717Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
JGI24006J15134_1000822910F072753AGGAMSKNNGHIYLSKIKYDCLDFISNFIKQNKFSPTYKEIGEHFQFSRARAGAICAELFKLGLISKGKAAHRKIRMTELQTSQIPTLNFNKEYSTMDHRR*
JGI24006J15134_1000822912F092717N/AMADFNNKISLWKRKPRETDVAGKSYPHYQGNINIDGVMKDCAVWIQTDKKNPNQPDMSGTVSEPYKKPTNEEAPF*
JGI24006J15134_100082295F017558N/AMFFIIHKPKDKFTSYSNVLFSTEAEALDWGKRSFKRKDIWDVVPYNSENYDKYWYK*
JGI24006J15134_100082296F077795N/AMKIINIEKEPLIYFLFDKKKLVYIGETKVENGKRINQHSDKKFDNVKCISSKKLNFLNNEYFRKYYELRLINKFKPKYNKEKTKAPTLNDFICKIFLFNENPNPQFITPLTAYNQIIYKGKYKKYLEYKNKRRNKKCLNQYTKVWDNLDINKKLYINNQNAFKFLVNESMKLPKNLSIKFTPRIERLHN*
JGI24006J15134_100082298F017045AGGAMATKSNSLLRRYAKLNELHGEIMQKPKNNIGQCVHSLQAFKKYIKTFRQIVLVENGDAIFKHTQL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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