Basic Information | |
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Taxon OID | 3300001450 Open in IMG/M |
Scaffold ID | JGI24006J15134_10015613 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-53 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3598 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (46.15%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 49.5666 | Long. (o) | -138.6666 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F030436 | Metagenome | 185 | N |
F043411 | Metagenome / Metatranscriptome | 156 | N |
F056150 | Metagenome | 138 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI24006J15134_1001561310 | F043411 | N/A | MKFINDTMKRRLTYKGKRVYIKSLDTKKALVSYTKEGNYKQFKVNIKDLAEFK* |
JGI24006J15134_100156134 | F030436 | N/A | MKSTLNRIAELIEEYNSTDIFDGNKLNQQLKEXTXRLYHIETMRTKAHEDYEKVIHTKVAEGFSVARATNEAKVEVPEMYQLRRLLESGYRVVDAMRTNISFLKSEMYNVTKEY* |
JGI24006J15134_100156136 | F056150 | GAG | MDCKLIKKIENFILYIGREYKVVELEDFKQDIFILLLNKGEDFIIQLDSENSIKKYVYKLCIFQIISERGHYRTKYYIPSHFSSIEDIETYSNSCFKDEVLNELINSLEGLDKIMLEHLLLCSGNKQCLAKKTNIHQNTIQYKFKELANKIKLNWSLNEFYT* |
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