NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24006J15134_10021350

Scaffold JGI24006J15134_10021350


Overview

Basic Information
Taxon OID3300001450 Open in IMG/M
Scaffold IDJGI24006J15134_10021350 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2974
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019390Metagenome230Y
F035078Metagenome173Y
F035487Metagenome172Y
F047913Metagenome149Y
F087759Metagenome110N

Sequences

Protein IDFamilyRBSSequence
JGI24006J15134_1002135010F035078GAGGMKEQATKLEIFRSHLLDRIKESRVGQIDLNPDGDPTFEVMPELQNYTWVIDLAKREGVAATPTSGSAGARLTITEEKTNV*
JGI24006J15134_100213503F087759GGAMENHPANIFLAAVISLVVTSGLMMGVFFLDFVLCDRQCLVPEVDIEEAQRTIIXLTDDQDLERM*
JGI24006J15134_100213504F019390AGGAGMNHKTGAIVTKNGKTGTIIDRARIYRCWEVKWSEGEYSIERDDQLKAAPANANIKVVQPPSLVVLSSVRENLTWKVKGDNFKQFVKKGKK*
JGI24006J15134_100213507F047913GAGMKAGDLLRHNGNHSIWLXLEVPEDLAGQSILIVAAKTGYKMWANSRGFEVVSKCQENVKSVSNALQSDSERVTL*
JGI24006J15134_100213509F035487AGGAMNIGDTITLKALGSATKRTKNRIHNRGKSGFKVRKLPQRATFTDNRGVDWVMLDSLDSLWSGWLPMDEIEVINESR*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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