NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24006J15134_10112406

Scaffold JGI24006J15134_10112406


Overview

Basic Information
Taxon OID3300001450 Open in IMG/M
Scaffold IDJGI24006J15134_10112406 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)957
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F012581Metagenome279N
F029779Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
JGI24006J15134_101124062F012581GAGMAKYILYAKKVYYYRKEITAQDSKSAEKRGADYEADDNAERLFEPTGEEFYITSIEESDDENET*
JGI24006J15134_101124064F029779AGGAGMRRMIMSDTEKYEEIXXALVGIDAXERYTHEEXVSYVYNLKKSEEKKYDNXK*
JGI24006J15134_101124065F008925AGGAGMTTXSKPTIDTITLNLINKLKQIEDTINEGAWEYIHLGDIIRLQDAFQEAISHYDLKKEGGIHDYGADKGKYQQFYYSDYVCHSDPKAFDPSKVEEEDDDE*
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