NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24006J15134_10114519

Scaffold JGI24006J15134_10114519


Overview

Basic Information
Taxon OID3300001450 Open in IMG/M
Scaffold IDJGI24006J15134_10114519 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)943
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006818Metagenome364Y
F010572Metagenome302N

Sequences

Protein IDFamilyRBSSequence
JGI24006J15134_101145191F010572AGGTGGMTGYANSPAGYMNPVAVDKIQHPDYDAKAAENTTMRLVQYLYPVVKNCTEMLEALCAETEVQVPTDLKDNMEFLKTVYNTQIDWHPRTMYGDEAAEELNARLT
JGI24006J15134_101145192F006818AGGAGMAGPPQMTTFARKPQQQQAVEPTREVAPAPNVLTRAPVSQAMMPSAEAMSDEELDLYVKRLTMRHKRLSRKWWGLRRKHGKDECPYCGMATGAGFCKIHQRDYDEYLGALSTIQNRSFGL
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