NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold MCRcombined_1047354

Scaffold MCRcombined_1047354


Overview

Basic Information
Taxon OID3300001459 Open in IMG/M
Scaffold IDMCRcombined_1047354 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from the Mid Cayman Rise - All Sites - lt1k
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)745
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From The Cayman Rise, Cayman Islands

Source Dataset Sampling Location
Location NameMid Cayman Rise, Cayman Islands, UK
CoordinatesLat. (o)18.35Long. (o)-81.85Alt. (m)Depth (m)2000 to 4000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042931Metagenome157N

Sequences

Protein IDFamilyRBSSequence
MCRcombined_10473543F042931N/AMNKEEFYISDWDMMMKIWSDCPVNGCKNKINLNLNTGKCFPHSEGSYQWKSFKILFKNTFINS
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