Scaffold JGI24003J15210

Basic Information
Taxon OID	3300001460 Open in IMG/M
Scaffold ID	JGI24003J15210_10000011 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001460 Open in IMG/M

Scaffold ID

JGI24003J15210_10000011 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-28

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	79508
Total Scaffold Genes	131 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	55 (41.98%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

79508

Total Scaffold Genes

131 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

55 (41.98%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

48.9699

Long. (^o)

-130.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F008401	Metagenome	334	Y
F025263	Metagenome / Metatranscriptome	202	Y
F098268	Metagenome	104	N
F099144	Metagenome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_10000011113	F099144	N/A	MAQVTFNRELGAAPVGITRFSQYRSENGGNVVVNFTTEDTSEGFFKRADKYGVTSSATGTGTVTLQAGSMSVKRVFIMDGTDGSVLGEVAPPKTSNRLDVSFTFSVGASVENYLYVEKTDRSPCVYRVTYTAA*
JGI24003J15210_1000001166	F025263	AGGAGG	VINAKQLHVAKIYPGNYTNVLRYWHEVRSIASQNANGVDTTMTGQPVGGPVGVVFQPGWIAQQAVGYVDMSYQALGTNNQLAYYAQPYGSGQNSDQQPFLNANVIVPSPDFHKDVRADITDGIKVPATAYVYRASLRLSGGDIVSSGVAGSDSTPELTLVPAMGEGLKDDGTVVSGQFGATITGANSAIANGSVASTNIFDSSSWAALGSETTWKLFTTNDQAASGLYQGSGVYDPRAGVNKLAGDDKALAICEVCWIIPDEPPERQDVALQPDGLTESQVYTSTSPS*
JGI24003J15210_1000001172	F001215	AGGAG	VASTSTNKQPMMVDRPFLRGARITSATPTVDPVNTQFANLVQLVRVGDIPSEDAAIVEDLFVVSNESYPDNGGVRAAAFGIYIYAPNQAAPSTAASILINKFTVGLSGSTEGLIQRVELPKTIAPTPQVGDTALVRPIELGGSEALYLEKGYVLGVGYLGDSVVAVSGGLSPSGISIWAQGGFY*
JGI24003J15210_1000001173	F098268	AGGA	MYTNQALVGLNYTFRYAMNGQSGSGGSEIPGLMYMYPSTQQDMGMRMVVIKPRDSINLLDLGLSVKSVFNYDILNKVIGVELSSNFGPPVSDMTGELVSDRFRADGTPKTTYNNYTVIAVGTKTGGPQVPTGAANLDTLFLSVDAERSFTTIKDESFAAPAASNPIVGEFLSSAMRFGCNCPDYLAREDFNLYKYAQKKTYPYTGTQDLKPGTYDAGTETFSGERPTNTRDLPGFVRDFGFIYTKVLLGAPQGTDSKQSSYSDPNLLFFQPRFCKHIYASWWDMQNRFGNYSYLKSFLAQPSDEPMDGRYREYFQRTLEKQTQFLQTAESLNWWESYSPARSDVPNHVLYSDMNPTMVKVLNFDTLASGVSIPLVPSGFVMFDIDEFNPLQPVPPEARPIFDGGIYQNGSPSGVSGTIIYDGGQYLNGSPLPPLFSPIVNGGTY*
JGI24003J15210_1000001176	F008401	N/A	MESQKLLTIAQTAELLNCSAGFVRKRISLTESRQPGGWPKSTYVNLQPNGVKSLFRINRDALQEYLKSQANQKDVNEEATVESETSTCSTGTCTF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24003J15210_10000011

Overview

Ecosystem & Geography

Associated Families

Sequences