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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300001460 Open in IMG/M |
| Scaffold ID | JGI24003J15210_10000040 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-28 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 46091 |
| Total Scaffold Genes | 69 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (52.17%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 48.9699 | Long. (o) | -130.6666 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010682 | Metagenome | 300 | Y |
| F023840 | Metagenome | 208 | Y |
| F025263 | Metagenome / Metatranscriptome | 202 | Y |
| F039113 | Metagenome | 164 | Y |
| F098268 | Metagenome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI24003J15210_1000004014 | F039113 | GGAG | MEILREIKEMRDAINSIDVSLQLLSSDQNDKRRTTAFVSKKILCQRLNIPSVTLDKLIHQGIVSDGETGLVEGTHYCKVDPSERNSSKFLFDPLVVIDSAWKNFKNV* |
| JGI24003J15210_1000004020 | F023840 | GGAG | MFEETDHITIGLTLEDDFTLTRLKNVAHDLRGEARDQYLWKTIFRFVCRERAYKCVMKEMGLNIDTNVDIFDSDDE* |
| JGI24003J15210_1000004025 | F098268 | GGA | VTRKIKGSDGFGWKNYQPKKSDFSFSKIEGASTNRQMLAPLPFKKKFRPDQNLKDFSILFDYNYASMWTRWRRGYELYMYTNQALVGLNYTFRYAMNGQAGSGGTEIPGLMYMYPSSEQDMGMRMVVIKPRDSINLLDLGLAVKSVFDYDTTYKIIGVELTSNFGAPVSFTTGEVFSDRFQADGVPKTTYNNYTVVGVGTKVGGPSVPAGEAVQDTLFLSMTSDTSWTTIADQTFKAPAQSVPTVGEFLSSAMRMGCNCPDYLGREDFNLYKYNQKRNYPYTDTQDLKPGTYDPGSETFTGERPVQTRDFAGFTRDFGFIYTNKLLDLPTYKDSAGSSYSDPNVLYFQPRFCKHIYASFWDMQNRFENYKYLTAYLAQPNDEPMDDRYREYFYQTLAKQTRFLQSTEALQWWEAYSPAKNTVPNHVLYSDMNPTMVKVLNFDTLASGVTSTLVPSGFIMFDIDEFNPLQPIPPSERPIIDGGIYIDGVASGVTPLITYDGGQYANGAQLPPLFAPAINGGTY* |
| JGI24003J15210_1000004032 | F025263 | AGGAGG | MTINPNQVHVSKIYPGNYTNVLRYWHEEKTMQFENANGVQTSYTNQPVGGPVGVVFQPGWIAQQAVGYLDLSFQALGTTNQLSYYTQAYASGTPFLNGNVIIPSPDFHKDVRADIADGIKAPAGAYVYRASLRVDGGDVVSSGVFGGSATPQLTLIPAVGEGLRDNGTVVSGQFGVSLTGASSRIANGSVGSTNIIDSSSLAALGSETQWKLFTTTDLGGASASGLAQGSGIYDPRATNGKLSGENKALAIAEVCWIVADEPPERQDVALQPDGLVESQTYTSTSPS* |
| JGI24003J15210_1000004034 | F010682 | GAG | MVYTPQSNWKYDKNLYHPIQSGPQRTGNDQNLTDTYLTISSGYIPPSNIQQTWNGVLDQGADFGRIPVGPPNLSGYFSTEWKAITPAPSGYWTNYENVNPRASGLLTSYEGYRQQGLYSTANSTVQTAIGPQPGLRNFGSFTWYGEQVPDNQLYSPFQTPGSNTNTSDGGGITGGAVAQPRIAAPALTNPTNDQSGSRAAWVYHYPVYCQTFTESRYTGVPGQMGSPVRNSYRGKSSRYVPNYGSVYGKLGEGVRNMVRTFSPSVNSSNQKSL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |