Basic Information | |
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Taxon OID | 3300001460 Open in IMG/M |
Scaffold ID | JGI24003J15210_10000164 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-28 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 27663 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (63.64%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 48.9699 | Long. (o) | -130.6666 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F018549 | Metagenome / Metatranscriptome | 234 | Y |
F087221 | Metagenome / Metatranscriptome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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JGI24003J15210_100001643 | F087221 | N/A | MSSTIGNLVDRVYREYLEPNDDIQSFSNLRTAITDTTTTTVAYESDFLTTEEEDAMGSGAFIEINQELMLVLSLNTADETLTVKRGARGTTAETHAQTDLIKINPPFIRLNVFNAVKDQIENLYPTLFAVESQTITSASGYVALTGADDSRIVAPLKAVSQYTSISGDQTSIQFRGVSIELIDVPTTVTSTGKVVQFSGIASGVNVHCTFRKKFGEVTSEQNTLSDTGLETEYEPIIMAGVAAQMISGKDIPAATTEYISDSIQASVYPVGSSTSIRNSLLQYQQILIQQARKDLRARYPEPVSLNSVVYPSA* |
JGI24003J15210_100001645 | F018549 | AGGAG | MSENIDNTEGSVESDKNWKAIREENKALKEELISYQSKERDNLFKEVGLDRTKGVGKAADLMYEGDLEANALKEFLSAEFGEEVVSGQQDSIRSTVNEGQNRLDALQQSAKAINETPDVTDQIAQAQKTGRVRDSIASKMMALNELDDK* |
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