NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24003J15210_10002955

Scaffold JGI24003J15210_10002955


Overview

Basic Information
Taxon OID3300001460 Open in IMG/M
Scaffold IDJGI24003J15210_10002955 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7412
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008425Metagenome / Metatranscriptome333Y
F024797Metagenome / Metatranscriptome204Y
F057396Metagenome / Metatranscriptome136Y
F064641Metagenome / Metatranscriptome128Y
F091005Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
JGI24003J15210_1000295510F091005N/AMASIELIPGFESFNENDNTIDNLNSMANTDLERIADYADMIKDRMSQGQTLDAWMYSKISDSVKNLNSVHDTMDGKDGIDEAEKXEFNPNETAERLKRREQQNIERYRAAQDREDPFAVQYYQLRVSLDKMDLQRLKIQTQIHQLKQKYKK*
JGI24003J15210_1000295512F024797N/AMHIKINIIMSEFFRTQMGRKMVDKDIPKLVDVLERIALQLEKKNKLDEKKFLLEERIQRLTIKEAKNNA*
JGI24003J15210_1000295513F008425AGGAMPDKDITYKQFITHMNKGNKVYMKKPKSWQKVWFWWESKKEKWFLNKAFDKRTDGRVEPEPSVWITANQMEGHMDHMVRMGYKYYINE*
JGI24003J15210_100029557F057396N/AMIKVKVVYMNGKETEYNVEYPKAYIAKIIERENELMVDQKSINRIYASDKLIAKFTNGFLNELVLEKSKPKKGAKSTQEAIADQQAINRKLKDKIKADEYWNEYQAEILHAQKMIKENVWVTDHTGGNIEITYS*
JGI24003J15210_100029559F064641N/AMETPQEDKDANAIRHYKGTIKQFKDMFDDLAGGKDTNAYGSPIRQGFDVHPTRDPGVRSPHWEEDHEDEKTQNENHVTDFKNFK*
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