NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24003J15210_10004486

Scaffold JGI24003J15210_10004486


Overview

Basic Information
Taxon OID3300001460 Open in IMG/M
Scaffold IDJGI24003J15210_10004486 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5997
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013289Metagenome272Y
F063603Metagenome129N
F095453Metagenome105N

Sequences

Protein IDFamilyRBSSequence
JGI24003J15210_100044861F063603N/AMKIKDNKKVDKKETDLSTKTWNMVQEVATNEKKVNGQMLYICKNTFDIFKNGNMEIAPYFGEKVNNVDPMNMFFNTDGSRKTLIAKDFDLFVTQCIIPALGQNLNDFQKNHPYEYAVLKQASPVVMFMICNNATYSKGTFLNMETDPVQFKLDWSILRTSVIVDPTEEQKAENVFRSSLFQNFFLKEEKGKDYYCTFRGERGLVE
JGI24003J15210_1000448612F013289AGGAGGMILDDQYITKDMFIKDSYKGNHYANNNAVMFDLQNGKQNVLCLCANRHIAESITEALNLLDNLEADG
JGI24003J15210_100044863F095453AGGAMTTKPQTNTVDFFIGLPKEFKPVSSSNNSDDNSGIKTAIFLLKSNEWSFDDDANCVKKNVIMDILNDYNAP*
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