Basic Information | |
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Taxon OID | 3300001460 Open in IMG/M |
Scaffold ID | JGI24003J15210_10005954 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-28 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5159 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (88.24%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 48.9699 | Long. (o) | -130.6666 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F021206 | Metagenome | 220 | Y |
F049285 | Metagenome | 147 | N |
F065691 | Metagenome | 127 | Y |
F089518 | Metagenome | 109 | N |
Protein ID | Family | RBS | Sequence |
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JGI24003J15210_1000595410 | F089518 | AGG | MEYVIRIKGKGGKCFAYHSTKDKSELDRLVKKYLAMKGITCEVKKRELT* |
JGI24003J15210_1000595414 | F049285 | AGGAG | MKLIKVRVNRTIEYEVSVGVDDDHKYEQVRDYLQTIDWDKEIGISPQNYKQISDYYDWIDWETDNV* |
JGI24003J15210_1000595417 | F021206 | N/A | YKRKRKNEMTVTLNQILAMENVLATRKIPSDIEAMAKAKRYSESKQDWIVLGDQPLHYVLRILAKEGLGDAV* |
JGI24003J15210_100059548 | F065691 | GAGG | LNIYLPEPITILVGVLAFLLGFLYKKHSDKEDIADAFDEGFEKGTKDVVRALSDITGRDIQIELEREDLDR* |
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