NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12712J15308_10000033

Scaffold JGI12712J15308_10000033


Overview

Basic Information
Taxon OID3300001471 Open in IMG/M
Scaffold IDJGI12712J15308_10000033 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33521
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008565Metagenome / Metatranscriptome331Y
F035384Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
JGI12712J15308_100000334F008565GGAGGMKRLAITATLLLLCISFPLPSQAARHKVPRYLTKESSVDMSKMTHIFVGWVDLGADDWALWGYGSKTDWTDIIGSLNSSFSRNLVPGRTITSAKDKADENAAGNDLYIKFSDVRVDYNNYHLILSIHFIDPKTNSEIAVIPVRPYYGNDWGLKNYLKAALDEVGTKVQVEVTGQSAEKKKK*
JGI12712J15308_100000336F035384AGGAGMKKHISLFWPVAVVLILSVGLSAKDLDTKGKAWLDVHSEAAAVNVNGNWHEKDWGAVVLLQAEGSRDVTGDGDGWAITGVVSGKQIFLLFSQKGSVAYTAELTWESDKSLNGSYAKGFMGEKAKNRPMHLIKP*
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