NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI24004J15324_10000076

Scaffold JGI24004J15324_10000076


Overview

Basic Information
Taxon OID3300001472 Open in IMG/M
Scaffold IDJGI24004J15324_10000076 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33771
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (22.03%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Associated Families14

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004461Metagenome / Metatranscriptome437Y
F005010Metagenome415Y
F005132Metagenome / Metatranscriptome411Y
F006322Metagenome / Metatranscriptome376Y
F008384Metagenome334Y
F010877Metagenome / Metatranscriptome298Y
F013231Metagenome / Metatranscriptome273Y
F016593Metagenome / Metatranscriptome246Y
F024348Metagenome / Metatranscriptome206Y
F026712Metagenome / Metatranscriptome197Y
F050369Metagenome / Metatranscriptome145N
F052949Metagenome / Metatranscriptome142N
F063073Metagenome130N
F077286Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
JGI24004J15324_1000007610F026712N/AMKQTFYPTDSEQQFLMDIVINEFANRHLPMDNYNVQEVAYRQAISDGAMRTDNYFNN*
JGI24004J15324_1000007616F077286GAGMSKLRYTVEWEGDVTNYKQDFETLEEARIAMIMHHKRNAVIKVRRIDEYKG*
JGI24004J15324_1000007618F050369N/AMKITERDLRNWFPADRRFLHFCAKYYGYSFHNDEVVERASHLAVLNVMRLVNRDEEFENEAHMTGIVMSSFRYAILNAYTNSLSANEKNLDVRNESEVTYGDGDDEYSKYKANAIADTKEIDNLIDVVRDYAETNLPYLQRRALIECVIGESSMKELATETDTSVRKVQLAKQKAVRRIKKFIAVLNENEEKYGKKEANGKYLSPSRSKLQIAIQLEPVRRDETRERNHSKAMSFVNTPPKV*
JGI24004J15324_1000007625F005010N/AMMRKRRHIREIQKYLDMLMIDQVNITLHASRFGWSEDVQNQLTNSALLIRKYQRRLRLIKM*
JGI24004J15324_1000007628F063073N/AMNLTAEEKNNTPIHSLILDRRKAFAELIRAFLRFNVPSAKKVEVMPNGSLCINDVIFKVDISDYTGIEGGFGYIFLNPSSGRLVIEKDNVKKIYKLEVDLLDE*
JGI24004J15324_100000763F006322AGGAMPAKRNKKGDVVSGRGSELTTLQSDFLEGIRNEGMDASSKIAKSLGYTNYYRDRRTNGTAFHKELMAIANAEMKSIEAAKGTNLSALIKIRDIALANDDMKAAMEAIKIINDMQGYKAPTKVEQTKIDITATIDLTAPTDEQDYLDIDAD*
JGI24004J15324_1000007632F013231N/AMINQRNYQTCKLIKNKIDRYLYEMANLFANIGTESTHEEVAEAYRREAEYIELIVELDPEKGERLRL*
JGI24004J15324_1000007633F024348N/AMIFEEYYEDLTDAEANLILDIYRVIDLLVYNHEPVTLVRLGFELSINTQELSDYLPIIITILNKVEDQYAEVRQVAD*
JGI24004J15324_1000007634F008384AGTAGMPRYDKLLIEREAMLSVQQGSLTNELGIFILQRSKEIAASAFVTDGNNELKQALIDAAVMRTCEKFLHYYTQGKSAANLVISIIYSTMTNKIVSLNHSDVYGQNIKGYLTYIEDGESVTKLMRYIKDDYLSEKL*
JGI24004J15324_100000764F010877N/AMSAKELLIALLSVTMPKGDIKSEMFKFYNSMVGKSKYFPRKENPKTACGSCIQRVKTSIWKWYHSDETAPSFSELTFTGRLGAHNIPLYTYNKNNGKEDSSNE*
JGI24004J15324_1000007641F005132N/AMVDVIFIDDNYLYQNFPLPKRMDRGALLALIQLEQYTSIQDLLGTCLYENIEAKVVAQSLXTAEQGLFKLVKYTLAMYSAKAAISILRTATATTKAEEQKQDQYILDTISTTVDSKLSYINKRITNYILDNAAIKAIATADGCDNDLFNEQDNYQGDVFYPQDGITDKFCEDGGVTYTP*
JGI24004J15324_1000007643F016593N/AMKRLKTGVVNTLSFVKLSTFTVNSFDVTLDKVVGTGSLTITNLTDLNNLDSCKDFIQINIDLLSNDIEGGEYELTITNDGDSYKYLTEVQDYKVTQTGSGIYGSTVRFTDL*
JGI24004J15324_1000007644F052949N/AMKGNIFISVPASDISNALPTSITRYDWVENTYNEEGEVESSNKVHPTWEQFGERNSGLFGSPVAVADVVVYEMEASWLDSEVSALIALGDGQSAPNYTVYTNAEVRKFIADNTAEL*
JGI24004J15324_1000007654F004461N/AMGIVISNLPYGDRRPELFIDSMVKSAAVLNRFRLIDGVKAKVNVPIFDATLTFGSDLCVFTGNSAATIGEKEMTVTTYKWSFLNCKNVLESSYRGLLLKKGQNNPETMDADFKDWVFDYFAKLSAEKALTVAGTALTTEMAADAAVLDYDTNAALTSANILDKMEGAYGTMSDVMLAAVYGDADRDFKPAIFLGTAAMQHYQIAIAGLYTTTPQGVVEGGVPNYYGMEVIHFPSMPANEFMIAAPQNIVMLTDEYNDVSAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.