NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24004J15324_10001510

Scaffold JGI24004J15324_10001510


Overview

Basic Information
Taxon OID3300001472 Open in IMG/M
Scaffold IDJGI24004J15324_10001510 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9253
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Haliea → unclassified Haliea → Haliea sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008026Metagenome340Y
F015100Metagenome / Metatranscriptome257N
F020911Metagenome221N

Sequences

Protein IDFamilyRBSSequence
JGI24004J15324_1000151012F020911AGGAGMTTEEEKEEGKSYTTSFRLNESANARLMLFCELTGMRKSEVVKAAISQFIAPTIQNANVIPPYYNPRAHTCVDNVIISKDIMKNNTETKNKDAKKEETHAWFQAFWEVCKNQQFARRVVKTIRLNWDDLSQLDPKIVAEKYNQHFHEKGNYAKHPNSWLNDGGYDNVVNNSVSTHGLNFDVTTKHPDD*
JGI24004J15324_100015107F008026AGGMGRNQGAKKYLISSKKALEILGFKSQTSLDQFHEDEGLTCYIISGTSGRGGRGFAWDKREINKWLKTEGRSSDEWLID*
JGI24004J15324_100015109F015100GGAMPISDGKGRKNNAVREETNPFIEHTSGYESVGASQREERNAEGGDDRHRVRIISKRVRICDPDNLVGGVKYLVDSLRAADIIPEDDPQAITLEVSQEKVKTYNEEETWVEVSVHD*
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