NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24004J15324_10001662

Scaffold JGI24004J15324_10001662


Overview

Basic Information
Taxon OID3300001472 Open in IMG/M
Scaffold IDJGI24004J15324_10001662 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8871
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (26.32%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037476Metagenome / Metatranscriptome168Y
F049999Metagenome146N
F062173Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
JGI24004J15324_1000166212F062173GGAGMKTYTYDSKIIGPNGYKELMVAVLNDKGSPVDSCCYKIDSPQVHDLICARKGAHDFGIKGWNLDPADQYQGYAVKK*
JGI24004J15324_100016623F037476N/AMNETPTVKLTGVFPKTFRVSQCETGRADCNFEYTDKKKQVFFEVCLHGAIELHEHFTELGYTELAPKVEFPTWHPNHKKGAVAR*
JGI24004J15324_100016624F049999AGGAGMKIKNYLVIFEEVNRLQFVVEASSEAEAIDLVEVGEGGDPTDQRAMEFNCLSVKEYLK*
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