NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24004J15324_10003306

Scaffold JGI24004J15324_10003306


Overview

Basic Information
Taxon OID3300001472 Open in IMG/M
Scaffold IDJGI24004J15324_10003306 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6320
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004493Metagenome436Y
F022999Metagenome212N
F030599Metagenome185Y
F048640Metagenome148N
F052260Metagenome / Metatranscriptome143N
F053632Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
JGI24004J15324_100033061F052260N/AMFVILATKPLNDGTKGFRFNFFGKKGIIRQRKLQSNGIKFTKGDCMNAYHFGKTTIYTEQSNNKTTARKFHHVAG*
JGI24004J15324_1000330610F048640AGGAGMQPQGLHAHARIKYTPTYIQKQLECRLFGKTFRSVAEAARHYGLAPSTAYEYHHQRLHRETFPNRKRWNTWK*
JGI24004J15324_1000330612F053632AGGAGMKLYKNNDGVWSGTQLDARKVCGKDYSTVDVPVDKPGLLKFLNLNKVGSSYTSNDKEFEPVYAPDTDLNSKAMSYFRWGYDKLCSGQYDDGKELIRKALLYKKTHDIHEGE*
JGI24004J15324_1000330615F022999AGAAGGMMWILVWMQLVTSQGVEHYQLDIFTKEADCQEALTKAVVLINSSSEMLACLEVDTRQ*
JGI24004J15324_1000330617F030599AGGAGMRLAIVIDIDGDIMYVPEDSSVFENYPKPKLFDNMKDAEEECAKWNTGIIVDFNTNKSVDKVSSYNDIRPFNSDERNRATERRLKNNGQ*
JGI24004J15324_100033066F004493GGAGMLKNIATNKALGFTNNEWNQLIEGNGLLIMWFIEWNNEEQDQSNILDFFKLKYNQSAGGDPWPMGGKVSLDGKYVSDGDDDLEPYFLINTDDGVGYIYPYAFVALPKKSGGHHIVRMD*
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