NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24004J15324_10034338

Scaffold JGI24004J15324_10034338


Overview

Basic Information
Taxon OID3300001472 Open in IMG/M
Scaffold IDJGI24004J15324_10034338 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1618
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085562Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
JGI24004J15324_100343382F085562N/AMDDFTRNSTEGTGIDKKIIKQAEKIIDKTPGFKEIRSIKDGMKYSEINSGVNCQQYKDNYDKITWNTDKPKPKFKVRVNGKVINDEEE*

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