NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20161J15289_1004962

Scaffold JGI20161J15289_1004962


Overview

Basic Information
Taxon OID3300001474 Open in IMG/M
Scaffold IDJGI20161J15289_1004962 Open in IMG/M
Source Dataset NameCubitermes ugandensis crop segment gut microbial communities from Kakamega Forest, Kenya - Cu122C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)662
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NameKakamega Forest, Kenya
CoordinatesLat. (o)0.2917Long. (o)34.856Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004326Metagenome443Y
F006224Metagenome378Y
F095675Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
JGI20161J15289_10049621F095675GGAVKNKYLMRHDKVCTHLHYSICKALGLETTDKWYTHVPKPVDEEGDITVLWNQE
JGI20161J15289_10049622F004326GGAMRGQFPRNLDEKLVDIKQSYRWLKSDDIKGETESTIVAAQDQAISTN*
JGI20161J15289_10049623F006224N/AYVPREQGGRGLMQLEAAHAIEITKLVEYVDKKEDPLIQSVRTHQHNTNSAVLETVRCLKIEXXXXXK*
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