NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Mariner_1098904

Scaffold Mariner_1098904


Overview

Basic Information
Taxon OID3300001522 Open in IMG/M
Scaffold IDMariner_1098904 Open in IMG/M
Source Dataset NameHydrothermal vent plume microbial communities from Mariner/Tui Malila, Pacific Ocean, of black smokers
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1172
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Hydrothermal Vent Plume → Hydrothermal Vent Plume Microbial Communities From Tui Malila, Pacific Ocean, Of Black Smokers

Source Dataset Sampling Location
Location NameMariner, ELSC, Pacific Ocean
CoordinatesLat. (o)-20.064428Long. (o)-176.171974Alt. (m)Depth (m)1900
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012859Metagenome276Y

Sequences

Protein IDFamilyRBSSequence
Mariner_10989042F012859AGGMVRNRRGLAPWSLAREAGIESATVDGTIEVPQYVQPVLDTGFVDEKGNWKGQKSSDKDFIALQTDEAIANGGTILTPDVNPDGTWPLDMTGYTRIQIAIKPTNGGNYDISAVMGPDSLSYANLSPVNAAADLRGNTATNESESGLYTLFSDTSEALTADVWNIFMINSDRLANQKLLQFKVVNNSGGSSDIETAFMRIV*
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