NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Abe_1081168

Scaffold Abe_1081168


Overview

Basic Information
Taxon OID3300001524 Open in IMG/M
Scaffold IDAbe_1081168 Open in IMG/M
Source Dataset NameAbe Hydrothermal Plume
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)829
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Abe, Lau Basin, Pacific Ocean (2)

Source Dataset Sampling Location
Location NameAbe
CoordinatesLat. (o)-21.0Long. (o)176.0Alt. (m)Depth (m)2100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000730Metagenome / Metatranscriptome917Y
F060030Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Abe_10811681F060030GGAMVIQKLLLEEGVKRGLKASREYSVSVLGYDFIGLISRLAIFFITGFLINAYFQASIQGGIWLNSLAGFFGVSFPTTLPDWTIKLFTTGFHNITFWQIVQTIAVLIVVVEYMQYDRMLKQNNEQPN
Abe_10811682F000730GAGLVSEFIPPEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFRQTNLSRKKEQGSGQMDAQIDDLIKXXXXXXXXXXXXXDEVNKDIIAQRAKGVSDDQMKGLLQKKQMLELGTSIPPEFYQIVGKPIVKKVISWMGKF*
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