NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Abe_1094964

Scaffold Abe_1094964


Overview

Basic Information
Taxon OID3300001524 Open in IMG/M
Scaffold IDAbe_1094964 Open in IMG/M
Source Dataset NameAbe Hydrothermal Plume
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)843
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Abe, Lau Basin, Pacific Ocean (2)

Source Dataset Sampling Location
Location NameAbe
CoordinatesLat. (o)-21.0Long. (o)176.0Alt. (m)Depth (m)2100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055296Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Abe_10949641F055296N/AMMTDTKLRSFNVENPHIYHRFQQIQLERGKTSTQRLNELIAQDVKEADPQFKELAAVRTKDAPDIITPNPFVMDQAHALIKWREYMLTLTKEEHGKLYNDVLAIKLATHDFDECVDCE*
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