Scaffold Abe_1127273

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Abe_1127273

Scaffold Abe_1127273

Overview

Basic Information
Taxon OID	3300001524 Open in IMG/M
Scaffold ID	Abe_1127273 Open in IMG/M
Source Dataset Name	Abe Hydrothermal Plume
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1436
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume → Black Smokers Hydrothermal Plume Microbial Communities From Abe, Lau Basin, Pacific Ocean (2)

Source Dataset Sampling Location
Location Name	Abe
Coordinates	Lat. (^o)	-21.0	Long. (^o)	176.0	Alt. (m)		Depth (m)	2100
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043627	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Abe_11272732	F043627	GGAG	MTSWLPGEIYPDELVPDATHVKGGKIEHTIQERPLIHICCNKDHFGDVNVDADSTNEPDVVADVLEGLPFDDDSFAASFADVPWVGNWMQNTSKCIKEMLRVAPVAYVMSPWLYGASWCKPTDIKVSWRPGVNKPILFVRYERNDGEFS*

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