NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold MLSed_10003811

Scaffold MLSed_10003811


Overview

Basic Information
Taxon OID3300001533 Open in IMG/M
Scaffold IDMLSed_10003811 Open in IMG/M
Source Dataset NameBenthic freshwater microbial communities from British Columbia, Canada
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13710
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (55.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic → Benthic Freshwater Sediment Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)49.283333Long. (o)-119.583333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074126Metagenome120N

Sequences

Protein IDFamilyRBSSequence
MLSed_1000381117F074126GGAMIHIFTSVVNRPDFVDIQNKLFQRFLNDEYRFHVVDDSVDDSVSDEFYSVCSTQNISYYRKNDRVEGLNPAQACAHTVQWTYDNLIRKNHRNDIVFFCDSDLFLIDDFSIAEYMQDAIISGLPQYRGHVKYMWNGIMFFNMSKIENLDIDFSDGVVDGQLTDVGGNTYHYFKNTGIVMKETDVEYPTHYNDIDLQKDSDGYNMELHLNGKFLHYRAATNWHSNWKSCDDPLEEKTKIFGQIIESILSE*
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