NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold MLSed_10008065

Scaffold MLSed_10008065


Overview

Basic Information
Taxon OID3300001533 Open in IMG/M
Scaffold IDMLSed_10008065 Open in IMG/M
Source Dataset NameBenthic freshwater microbial communities from British Columbia, Canada
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19425
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic → Benthic Freshwater Sediment Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)49.283333Long. (o)-119.583333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024291Metagenome / Metatranscriptome206Y
F032198Metagenome180Y
F091636Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
MLSed_1000806511F024291AGGAGGMATSAQGLSVTFASSTLTITSVQVQDTQELVDATHLGVSPNARRIFVGGFASDREVTVDYISTTILTAGLSGSLSISAPISITGNATVSSASIGGSVGDFIRGSATFRLA*
MLSed_1000806519F091636AGGAGMIHAQFDKFAATLPTAAVGSTATSTLTVDRIGYDHVSVSAIRAGNASTVFASVLKVEESDNNSDYTDVTALVGGGTGGFTIPAVTDTNSAAIVQMDIDCRARKRYLKVSMTPGVTATLGIVAGLSKAEVAPTSAAEKNVIGWVVG*
MLSed_100080658F032198N/AMTVRQLLSNIDSEELSEWYAYDQRWPLPDTWQQTARLCRIVMASSGNYKKHDIPDESVFIPAAVKASQSADQMIAELMKLKK*
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