NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold MLSed_10010847

Scaffold MLSed_10010847


Overview

Basic Information
Taxon OID3300001533 Open in IMG/M
Scaffold IDMLSed_10010847 Open in IMG/M
Source Dataset NameBenthic freshwater microbial communities from British Columbia, Canada
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6929
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic → Benthic Freshwater Sediment Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)49.283333Long. (o)-119.583333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021885Metagenome / Metatranscriptome217Y
F049303Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
MLSed_100108478F021885AGGAGMNIFEKLRLLAEWSPLLTYMQTLAAEDDIHAKAVIVADALEWVAARTEIEWDDELASHMSDILVSEEGEAFVRWILEKIQVNDDE*
MLSed_100108479F049303AGGMSDPVRILAVIAAVAVLVVPYLPAIGKRLAKIWQSLPSAPKAPANGIGVDDLTYVLGLANRLRLDGNEKATDLAKQLLDAMLEVPKK*

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