NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold MLSed_10019409

Scaffold MLSed_10019409


Overview

Basic Information
Taxon OID3300001533 Open in IMG/M
Scaffold IDMLSed_10019409 Open in IMG/M
Source Dataset NameBenthic freshwater microbial communities from British Columbia, Canada
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4574
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic → Benthic Freshwater Sediment Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)49.283333Long. (o)-119.583333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001215Metagenome746Y
F061665Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
MLSed_100194092F001215AGGAGLASTSTNKSPALIDRPFLRGARITSATTTVDSSNPDFTDLIQLVRVGDLPSEDAALVEDIFVVSNEGYPDDAGLYTAAFGIYVYAPNQAAPSTSAAMMIGKFEVGLSGGTEGLLQKVELPATNAPTPQTGDTNLSRPIELGKMEGLYLEKGYILCVGYLGNGPNAVSGGLSPSGVTWMAQGGFY*
MLSed_100194097F061665N/AGNDKALAICEVCWIVPDEAPERQAVALQPDGLIESSAYTSTTPA*
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