Scaffold A3PFW1_10023851

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold A3PFW1_10023851

Scaffold A3PFW1_10023851

Overview

Basic Information
Taxon OID	3300001535 Open in IMG/M
Scaffold ID	A3PFW1_10023851 Open in IMG/M
Source Dataset Name	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illumina
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2965
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Source Dataset Sampling Location
Location Name	Axel Heiberg Island, Nunavut, Canada
Coordinates	Lat. (^o)	79.26	Long. (^o)	-90.46	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040820	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
A3PFW1_100238512	F040820	GAG	VLLSLKDGTSRGSASVGKDVVAVIVSDDGKTAYLADSAPGDVYAVRLPGLQVAWKQHVGGAPFGLLLHDGRLFVSLFDGAAVVELDLSNGRELATHPVPQGPAVMTTDGGGHVVVAGTRGQLNVIGGGQLAAGNGFGLAFAGGTLWSADYERAELVPAGDDHRVGLPLPVFPFWLAPGAGSTLLIAAEGGTEDTDPGGVFSFDTMTGTFTTLATPKDPDQVLQSGSAIFVAAHGDQEVLAIQDGRVSMWARGAGVVAIAPDPSLDLLVVAVNAHE*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.