Scaffold A2065W1_10615662

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold A2065W1_10615662

Scaffold A2065W1_10615662

Overview

Basic Information
Taxon OID	3300001537 Open in IMG/M
Scaffold ID	A2065W1_10615662 Open in IMG/M
Source Dataset Name	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illumina
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1757
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Source Dataset Sampling Location
Location Name	Axel Heiberg Island, Nunavut, Canada
Coordinates	Lat. (^o)	79.26	Long. (^o)	-90.46	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039883	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
A2065W1_106156621	F039883	N/A	EDTMRPAPRVAFTTPPSPGQAIELEVENLGGTLVAGAVIVQAGDDLYAGELAMPEHAAPRRLYVSPVLKAWQRKSQPSCLLLVGRDLSGKCWDYLDGNKEINEPRKWLAGRLRDLRLSGVVDFPAVTGPAKS*

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