NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12659J15293_10005229

Scaffold JGI12659J15293_10005229


Overview

Basic Information
Taxon OID3300001546 Open in IMG/M
Scaffold IDJGI12659J15293_10005229 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3814
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003832Metagenome / Metatranscriptome466Y
F005268Metagenome / Metatranscriptome406Y
F014888Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
JGI12659J15293_100052294F014888AGGAGMNKVVEILLTVVALAGLYSAISTSTWPPANSAVRAKQAVVVAGDGSDPMPLCRPGPCPM*
JGI12659J15293_100052296F003832AGGMKSKAKQLSTAANWPPEEGQIISLRSSTASETAILKEVRWGLVWRDFVLEDGRVIPEHRISGCPQPQAWRKISEVTDQEREKCEERLLSMARAGMDPRERDQSFWAELNQYLAYTYLRFKPAGSKPQDTER*
JGI12659J15293_100052297F005268GAGGVNRSDDEPEELQVWRVLSEAGLVEIRLDEFAERIRDVKRIVTGRLFDLLNFDTGVKERESAAYSLGTLKELELKVLANAPKPPDPSEM*
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